iCloud Drive folders not showing on OS X

I am seeing some strange behaviour... As you can see here: http://ift.tt/1BgoXvR I have lots of folders I don't see on my Mac (shown here): http://ift.tt/1AbvvZz Not sure why this is. When ever I make a new file or folder on either my Mac or on iCloud.com I see the file/folder. It's just I don't see those default Quicktime folders etc... weird any ideas? Thanks