Command Line Tool has been installed but "No receipt for 'com.apple.pkg.CLTools_Executables' found at '/'"

The No receipt for 'com.apple.pkg.CLTools_Executables' found at '/' error occurs when I type pkgutil --pkg-info=com.apple.pkg.CLTools_Executables on my terminal.

Some posts on the internet tells me that this happens when the command line tool has not been installed on Xcode.

But, I've installed CLT already:

I'm guessing the cause of the problem might be having executed following command several hours ago so as to eliminate warnings of brew doctor: $ /Developer/Library/uninstall-developer-folder

Actually, I encountered this problem on make all to install some library and hope to resolve the issue to install it.

OS is mountain lion and the version of XCode is 5.1.1.